Note 1: You do not need neither username nor password. It should contain connection information to your server(s), for example: connections: However, if you need to connect to the same openBIS connections many times, this will become convenient.Ĭreate a file openbis-connections.yaml. This step is not really necessary, as you can define openBIS connections within the Jupyter notebook. pip install -upgrade jupyter-openbis-extension It will automatically install the various dependencies, e.g. If you haven't done yet: download the latest jupyter-openbis-extension from pip.

However, Tornado 5.1.1 will not work with Jupyter Lab 3.

If you encounter such incompatibilities, try to downgrade to Tornado 5.1.1. There is a known incompatibility before Firefox 61.0b13 with Tornado > 6.x (the webserver used by Jupyter). This extension has been successfully tested with Safari 12.0.3, Chrome 72.0 and Firefox 66.0. The kernel can be anything (Python 2.7, Julia, R, Perl.) The Jupyter notebook server starts this extension during startup and must therefore run under the same Python version. The jupyter-openbis-extension needs at least Python 3.3 in order to run.

Jupyter notebooks and r mac os x